I completed the update yesterday to find my saved queen's bounties were deleted from my hunter's inventory. I could understand this if all bounties were deleted with the 2.0 update but my vanguard ones were untouched. I don't enjoy having my completed bounties taken away with not even the slightest reasoning. (Considering other bounties that were completed are allowed to stay in one's inventory.)
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They were still credited to your character
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The updates on the app warned us at least twice that these bounties would be erased with the patch