I understand this may be an outdated issue, but I thought it might be good to bring it up again as its still a thing.
Before Witch Queen, I progressed through the old wish ender quest. I got to the step where I have to power up the three tokens. I proceeded through the dungeon as normal killing the secret bosses as I went. Each boss did indeed power up each token, but as I went to turn the tokens in at the altar after the ogre boss, I got a message telling me I did not have the "purified" tokens. I am not sure if there is a workaround for this, but even just providing an option to dismantle these would be great.
thanks
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the old quest is outdated you want to find the quest called hunter remembrance that is how wish ender is obtained now talk to Petra in dreaming city she should have the quest or check the quest archive under exotic.