Would I lose all of the saves I made after it?
For example if I loaded my 50th save and my current save was 80, would I be able to go back to my current save without losing all the progress I made from save 50 to 80?
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You would create a dimensional continuum shift; that would merge the two or three potential dimensions of your game-play into one; thus it will destroy the auto-save universes and instead a new one will be created. Worlds will burn, people will die... But you can still play the game just fine. : )