Personally, I don't think PvP should be required if you don't want to do it. The sacrifice for not running it was exotic bounties.
I don't see why they feel the need to punish players for sticking to the part of the game they enjoy most. Faction gear shouldn't be gated behind PvP seeing as your constantly running missions for them.
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I definitely agree getting rep in PvE, but only paying through PvP is awkward, to say the least. I think they should still rethink the economy situation, but I don't have a perfect answer as to how without favoring one game mode.